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PUBLICATIONS 2009 1.
Huang,
J. H., Kim, J., Agrawal, N., Sudarsan,
A., Maxim, J., Jayaraman, A#. and Ugaz, V#. “Rapid fabrication of branched
3-D microvascular networks using electric
discharge”. Advanced Materials In
press (2009). #: Joint corresponding authors 2.
Hegde,
M., Wood, T. K. and Jayaraman, A. “The neuroendocrine
hormone norepinephrine increases Pseudomonas aeruginosa
PA14 virulence through the las quorum
sensing pathway”. Applied Microbiology
and Biotechnology. In press (2009). 3.
Newton,
B., Russell, W. K., Russell, D. H., Ramaiah, S. K. and Jayaraman, A. “Liver
proteome analysis in a rodent model of alcoholic steatosis”.
Journal of Proteome Research. In
press (2009). 4.
Englert, D. L*., Jayaraman, A. and Manson, M. D.
“Microfluidic techniques for the analysis of bacterial chemotaxis”.
Methods in Molecular Biology. In
press (2009). 5.
Wang,
S., Chen, P. C., Berthiaume, F., Toner, M.,
Jayaraman, A. and Yarmush, M. L. “Dynamic effect of
heat shock pre-treatment on apoptotic responses to TNF-α in liver
cells”. Journal of Biomechanical Engineering. In press (2009). 6.
Englert, D. L., Manson, M. D. and Jayaraman, A. “Using a microfluidic device
to investigate interactions between signaling molecules on Escherichia coli chemotaxis”.
Applied and Environmental Microbiology.
In press (2009). 7.
Englert, D. L*., Janakiraman,
V., Jayaraman, A#. and Baskaran, H#. “Modeling growth and quorum
sensing in biofilms grown in microfluidic chambers”. Annals of Biomedical Engineering. 37: 1206-16 (2009). #:
Joint corresponding authors 2008 8.
Huang,
Z., Senocak, F*., Jayaraman, A#. and Hahn, J#. “Integrated modeling and
experimental approach for determining transcription factor profiles from
fluorescent reporter data”. BMC Systems Biology. 2: 64 (2008). #:
Joint corresponding authors. “Highly accessed” 9.
Lai, N., Jayaraman, A. Lee, K. “Vascular
endothelial cell growth factor receptor-2 mediates synergistic proliferation
and differentiation of adipocytes and endothelial
cells in co-culture”. Tissue
Engineering. Epub ahead of print. (2008). 10.
Jayaraman, A. and Wood, T. K. “Bacterial quorum
sensing: Signals, circuits, and implications for biofilms and disease”. Annual Reviews of Biomedical Engineering.
10: 145-167 (2008). “Top 10 downloaded articles” 11.
Banerjee, A., Jayaraman,
A., Russell, W. K. and Ramaiah, S. K.
“Identification of proteins to predict the molecular basis for observed gender
susceptibility in a rat model of alcoholic steatohepatitis
by 2-D gel proteomics”. Proteomics.
8: 4327-37 (2008). 12.
Lee, J.,
Zhang, X. S., Hegde, M*., Bentley, W. E., Jayaraman,
A. and Wood, T. K. “Indole cell signaling occurs
primarily at low temperatures in
Escherichia coli”. ISME Journal.
2: 1007-23 (2008). 13.
Jayaraman, A., Maguire, T, Vemula, M., Kwon, D. W., Vannucci,
M., Berthiaume, F. and Yarmush,
M. L. “Gene expression profiling of long-term changes in rat liver following
burn injury”. Journal of Surgical
Research. Epub ahead of press, Aug 28, 2008. 14.
Bansal, T*., Jesudhasan, P., Pillai, S, Wood, T. K. and Jayaraman, A.
“Temporal regulation of enterohemorrhagic Escherichia coli virulence mediated by autoinducer-2”. Applied Microbiology & Biotechnology. 78:
811-9 (2008). 15.
Soni, K., Jesudhasan, P., Cepeda, M., Williams, B., Hume, M., Russell, W. K.,
Jayaraman, A. and Pillai, S. D. “Autoinducer-2 is involved in regulating a
variety of cellular processes in
Salmonella typhimurium.” Foodborne Pathogens and Disease. 5:
147-53 (2008). 16.
King, K.
R., Wang, S., Jayaraman, A., Yarmush, M. L. and
Toner, M. “Microfluidic
flow-encoded switching for parallel control of dynamic cellular
microenvironments”. Lab Chip 8:
107-16 (2008). 2007 17.
Bansal, T., Englert,
D., Lee, J., Hegde, M., Wood, T. K. and Jayaraman, A. “Differential effects
of epinephrine, norepinephrine, and indole on
Escherichia coli O157:H7 chemotaxis,
colonization, and gene expression”.
Infection & Immunity. 75: 4597-607 (2007). 18.
Senocak, F., Si, Y., Lee, K. and Jayaraman,
A. “Effect of forced uncoupling protein-1 expression on 3T3-L1 adipocyte gene expression”. FEBS Letters 581: 5865-71
(2007). “Cover article” 19.
Si, Y., Palani,
S., Jayaraman, A. and Lee, K. “Effects of forced uncoupling protein 1
expression in 3T3-L1 cells on mitochondrial function and lipid metabolism”.
Journal of Lipid Research 48: 826-36 (2007). 20.
Lee, J., Bansal, T., Jayaraman, A., Bentley,
W. E. and Wood, T. K. “Enterhemorrhagic Escherichia coli biofilms
are inhibited by 7-hydroxyindole and stimulated by isatin”. Applied and Environmental Microbiology
73: 4100-9 (2007). 21.
Lee, J., Jayaraman, A. and Wood, T. K. “Indole is an inter-species signal mediated by SdiA”. BMC
Microbiology 7: 42 (2007). 22.
Singh, A.,
Jayaraman, A. and Hahn, J. “A case study of representing signal transduction
in liver cells as a feedback control problem”. Chemical Engineering Education. 41: 177-182 (2007). 23.
Y. Chu, A. Singh, A. Jayaraman, and J. Hahn,
2007. Parameter Sensitivity Analysis of IL-6 Signaling Pathways IEEE Trans Sys Biol. 1: 342-52 (2007). 24.
King, K.
R., Wang, S., Jayaraman, A., Toner, M. and Yarmush,
M. L. “A High-throughput Microfluidic
Real-time Gene Expression Living Cell Array”. Lab-on-Chip 7: 77-85 (2007). 25.
Soni, K., Jesudhasan, P., Cepeda, M., Williams, B., Hume, M., Russell, W. K.,
Jayaraman, A. and Pillai, S. D. “Proteomic analysis to identify the role of LuxS/AI-2 mediated protein expression in Escherichia coli O157:H7”. Foodborne
Pathogens and Disease. 4: 463-71 (2007). 26.
Banta, S., Vemula, M., Yokoyoma, T., Jayaraman, A., Berthiaume,
F. and Yarmush, M. L. “Contribution of gene
expression to metabolic fluxes in hypermetabolic
livers induced through burn injury and polymicrobial
sepsis in rats”. Biotechnology & Bioengineering
97: 118-37. (2007). 2006 27.
Singh, A, Jayaraman, A.,
and Hahn, J. “Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes”. Biotechnology
& Bioengineering. 95: 850-62 (2006). 2005 28. Wieder, K. J.,
King, K. R., Thompson, D. M., Toner, M., Yarmush,
M. L. and Jayaraman, A. “Optimization of reporter cells for expression
profiling in a microfluidic device”.
Biomedical Microdevices. 7: 213-22 (2005). 29. Jayaraman, A.,
Roberts, K. A., Yoon, J., Yarmush, D. M., Duan, X., Lee, K. and Yarmush,
M. L. ”Identification of neutrophil
gelatinase-associated lipocalin
(NGAL) as a discriminant marker of the hepatocyte secreted protein response to IL-1β: a
proteomic analysis,” Biotechnology
Bioengineering. 91: 502-15
(2005). 30. Duan,
X, Yarmush, D. M, Berthiaume,
F, Jayaraman,
A., and Yarmush,
M. L. “Evaluation of immunoprecipitation-based
depletion of albumin for two-dimensional gel separation of normal and
inflamed mouse plasma”. Proteomics.
5: 3391-4000 (2005). 31. Jayaraman, A, Roth, C.M. and Yarmush, M.L.
“Comprehensive evaluation of an in vitro model of hepatic inflammatory
response by gene expression profiling”. Tissue Engineering. 11: 50-63.
(2005). 2000 - 2004 32. Vemula, M., Berthiaume,
F., Jayaraman, A., and Yarmush, M. L. “Expression profiling analysis of the
metabolic and inflammatory changes following burn injury in rats”. Physiological Genomics. 18: 87-98.
(2004). 33. Thompson, D., Toner, M., Yarmush, M. L. and Jayaraman, A. “Dynamic gene expression profiling using a living cell array”. Analytical Chemistry.76: 4098-4103.
(2004). 34. Duan,
X, Berthiaume, F, Yarmush,
D. M, Jayaraman, A., and Yarmush, M. L. “A
mouse serum two-dimensional gel map: Application to profiling burn injury and
infection”. Electrophoresis. 25: 3055-3065. (2004). 35. Duan, X., Yarmush, M. L., Jayaraman, A. and Yarmush
M. L. “Dispensable role for interferon gamma in the acute phase response: A
proteomics analysis”. Proteomics. 4:
1830-1839. (2004). 36. Yarmush, M. L. and
Jayaraman, A. “Advances in Proteomics Technologies”. Annual Reviews of
Biomedical Engineering. 4: 349-373. (2002). 37. Jayaraman, A., Yarmush,
M. L. and Roth, C. M. “Molecular Bioengineering”. Industrial &
Engineering Chemistry Research. 44:441-455. (2002). 38. Jayaraman, A., Walton, S. P. and Roth, C. M.
“Rational selection and quantitative evaluation of antisense oligonucleotides”. Biochimica Biophysica Acta.1520:
105-114 (2001). 39. Jayaraman, A., Yarmush,
M. L. and Roth, C. M. “Dynamics of gene expression in rat hepatocytes
under stress”. Metabolic Engineering.
2: 239-251. (2000).
1992 - 1998 40. Jayaraman,
A., Duarte, D. D. and Wood, T. K.
“Inhibition of anaerobic corrosion of copper and aluminum by
protective bacterial biofilms”. Applied
Microbiology & Biotechnology. 52: 787-790. (1999). 41. Jayaraman, A., Carson, R. M., Hallock, P. J, and Wood, T. K. “Inhibiting anaerobic
corrosion of steel by excluding sulfate-reducing bacteria with in situ generated antimicrobials”. Applied Microbiology & Biotechnology.
52: 267-275. (1999). 42. Ismail, K. M., Jayaraman, A., Wood, T. K.
and Earthman, J. C. “The Influence of Bacteria on the Passive Film Stability of 304 Stainless Steel”. Electrochimica Acta.
44: 4685-4692. (1999). 43. Jayaraman, A., Duarte, D. D, Lee, C-C.,
Chen, M. W, Mansfeld, F, and Wood, T. K. “Cloning the antimicrobial peptides indolicidin and bactenecin to
inhibit sulfate-reducing bacteria on stainless steel”. Journal of Industrial Microbiology & Biotechnology. 22:
167-175. (1999). 44. Jayaraman, A., Sun, A. K., Earthman, J. C.
and Wood, T. K. “Characterization of axenic P. fragi and E.
coli biofilms that inhibit corrosion of SAE 1018 steel”. Journal of Applied Microbiology. 84: 485
– 492. (1998). 45. Jayaraman, A., Earthman, J. C. and Wood, T.
K. “Corrosion inhibition of SAE 1018
steel by aerobic biofilms”. Applied
Microbiology and Biotechnology. 47: 62-68. (1997). 46.
Jayaraman, A., Cheng, E T., Earthman, J. C.
and Wood, T. K. “Importance of biofilm
formation for corrosion inhibition of SAE 1018 steel by axenic
aerobic biofilms” Journal of Industrial Microbiology and Biotechnology. 18:
396-401. (1997). 47.
Jayaraman, A., Cheng, E T., Earthman, J. C.
and Wood, T. K. “Axenic
aerobic biofilms inhibit corrosion of SAE 1018
steel through oxygen depletion”. Applied Microbiology and Biotechnology. 48: 11-17. (1997). 48. Jayaraman, A., DeBernardez,
E. and Goldberg, E. B. “Thermal unfolding of bacteriophage
T4 short tail fibers”. Biotechnology Progress. 13: 837 – 843.
(1997). 49. Kumar, R. A., Jayaraman, A., Lakshmanan, M. and Gunasekaran,
P. G. “Bioconversion of gallic acid into pyrogallol by immobilized Citrobacter freundii TB3”. Journal of Fermentation and Bioengineering 74:159-162 (1992).
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Arul Jayaraman. All Rights Reserved. |
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